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Bioinformatics: High Performance Parallel Computer - download pdf or read online

By Bertil Schmidt

New sequencing applied sciences have damaged many experimental obstacles to genome scale sequencing, resulting in the extraction of massive amounts of series facts. This growth of organic databases tested the necessity for brand new how you can harness and practice the magnificent quantity of obtainable genomic info and convert it into substantial organic realizing.

A complilation of contemporary ways from trendy researchers, Bioinformatics: excessive functionality Parallel desktop Architectures discusses tips to reap the benefits of bioinformatics purposes and algorithms on various sleek parallel architectures. components proceed to force the expanding use of contemporary parallel desktop architectures to deal with difficulties in computational biology and bioinformatics: high-throughput options for DNA sequencing and gene expression analysis—which have resulted in an exponential progress within the quantity of electronic organic data—and the multi- and many-core revolution inside of computing device architecture.

Presenting key information regarding easy methods to make optimum use of parallel architectures, this book:

  • Describes algorithms and instruments together with pairwise series alignment, a number of series alignment, BLAST, motif discovering, trend matching, series meeting, hidden Markov types, proteomics, and evolutionary tree reconstruction

  • Addresses GPGPU know-how and the linked vastly threaded CUDA programming model

  • Reviews FPGA structure and programming

  • Presents a number of parallel algorithms for computing alignments at the Cell/BE structure, together with linear-space pairwise alignment, syntenic alignment, and spliced alignment

  • Assesses underlying recommendations and advances in orchestrating the phylogenetic probability functionality on parallel laptop architectures (ranging from FPGAs upto the IBM BlueGene/L supercomputer)

  • Covers numerous potent options to completely make the most the computing potential of many-core CUDA-enabled GPUs to speed up protein series database looking out, a number of series alignment, and motif finding

  • Explains a parallel CUDA-based technique for correcting sequencing base-pair mistakes in HTSR data

Because the quantity of publicly to be had series information is transforming into swifter than unmarried processor center functionality pace, glossy bioinformatics instruments have to make the most of parallel computing device architectures. Now that the period of the many-core processor has started, it truly is anticipated that destiny mainstream processors can be parallel platforms. worthwhile to an individual actively interested by learn and purposes, this ebook enables you to get the main out of those instruments and create optimum HPC recommendations for bioinformatics.

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Bioinformatics: High Performance Parallel Computer Architectures (Embedded Multi-Core Systems) by Bertil Schmidt

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